Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004900.1_174_254_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

174 - 254

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCAGC

5'SS Class:

major

3'SS Sequence:

TCCCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAACGAC

U12 Branch Point Sequence:

GGGCCGGTAACG

Flanking Amino Acid:

HVEVKDPDGKVVLSRQYGSE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

63.1

43.4

Major BPS

47.7

-0.1

1.3

44.5

38.1

Major PPT

70.6

0.46

0.7

61.4

29.1

Minor 5ss

32.9

-2

3.1

42.5

44.6

Minor BPS

40.9

-0.8

2.5

46.25

45.9

Associated Gene:

Gene:

TMED4

Ensembl Gene ID:

ENSAPLG00000028224

Chromosome:

PEDO01004900.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047506

21 - 1063

1043