Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004925.1_1008_1395_F

Intron Information:

Intron Rank:

124147

Intron Class:

major

Intron Phase:

Intron Coordinates:

1008 - 1395

Intron Length:

388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCTG

5'SS Class:

strong_major

3'SS Sequence:

TCGTTCCGGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCCT

U12 Branch Point Sequence:

TGCTCCTTGTCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

68.8

43.8

Major BPS

33.6

-1

4.3

71.4

45.1

Major PPT

64.8

0.33

1.1

61.7

Minor 5ss

-1.6

3.2

46.7

48.6

Minor BPS

47.3

-0.2

3.5

70.44

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016919

Chromosome:

PEDO01004925.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046872

21 - 1785

1765