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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004930.1_665_1542_R

Intron Information:

Intron Rank:
131276
Intron Class:
major
Intron Phase:
Intron Coordinates:
665 - 1542
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.7
0.74
0.7
81.4
30.2
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
65.6
0.57
1.9
88.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017839
Chromosome:
PEDO01004930.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020548
21 - 2154
2134