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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004940.1_2087_2268_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2087 - 2268
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CCCGTGGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
AGGCTCTGACCC
Flanking Amino Acid:
MKRMAESELS
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
60.2
0.23
1
52.5
36.8
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
45.8
-0.3
1.7
51.62
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024538
Chromosome:
PEDO01004940.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041780
1961 - 3348
1388