Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004940.1_2389_2500_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2389 - 2500

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAGGTCCC

5'SS Class:

major

3'SS Sequence:

GCCGGCCCCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

GGGGGCTGATGC

Flanking Amino Acid:

MMCSKCQGKHKRFELDRDPL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

64.5

38.1

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

58.9

0.2

0.9

34.2

Minor 5ss

35.8

-1.6

3.2

45.4

36.5

Minor BPS

34.4

-1.2

2.1

36.19

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024538

Chromosome:

PEDO01004940.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041780

1961 - 3348

1388