Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004945.1_1642_1858_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1642 - 1858

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGTTGGTA

5'SS Class:

major

3'SS Sequence:

CTGGTCCAGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTCCAG

U12 Branch Point Sequence:

TCCCTCTCCAGG

Flanking Amino Acid:

SSDALTQPASKSV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.6

0.25

56.4

Major BPS

46.3

-0.2

1.7

60.4

45.8

Major PPT

59.3

0.21

1.1

54.8

40.5

Minor 5ss

33.7

-1.9

3.6

46.5

Minor BPS

38.8

-1

2.1

39.73

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016140

Chromosome:

PEDO01004945.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016834

1207 - 1868

662