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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004946.1_955_990_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
955 - 990
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAAGGGG
5'SS Class:
major
3'SS Sequence:
AAACTTGGGGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAGAT
U12 Branch Point Sequence:
TAGGAGAAAACT
Flanking Amino Acid:
FDTSGIPRCPGKLQFVPPLL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
59.4
42.5
Major BPS
50.8
0.02
1.1
47.1
36.1
Major PPT
41.9
-0.4
1.7
39
43.6
Minor 5ss
17.2
-3.8
3.9
19.6
38
Minor BPS
36.1
-0.9
2.4
54.67
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028191
Chromosome:
PEDO01004946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023824
359 - 1087
729