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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004951.1_430_1376_F

Intron Information:

Intron Rank:
148860
Intron Class:
major
Intron Phase:
Intron Coordinates:
430 - 1376
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCATCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CATTCAGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76
0.59
0.9
73.4
37
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
50.8
0.1
2.3
74.1
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030110
Chromosome:
PEDO01004951.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021767
21 - 2274
2254