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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004964.1_203_282_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
203 - 282
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGATTTG
5'SS Class:
major
3'SS Sequence:
CCCCGTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CTGGCCCTGACG
Flanking Amino Acid:
IQYQENMRLQAQFSQLSQLG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
68.2
39.6
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
66.5
0.37
0.8
56.8
33.5
Minor 5ss
36.3
-1.5
3.3
48.2
47.9
Minor BPS
48.7
-0.2
1.9
54.95
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018820
Chromosome:
PEDO01004964.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022947
6 - 1173
1168