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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004964.1_642_730_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
642 - 730
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CCCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GGGTGCTGAGCC
Flanking Amino Acid:
PEGTLDVLQTWCEKLAEIIW
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
58.5
40.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
69.6
0.44
0.8
60.5
29.4
Minor 5ss
26.3
-2.7
3.2
28.5
38.7
Minor BPS
44.5
-0.4
2.1
53.03
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018820
Chromosome:
PEDO01004964.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022947
6 - 1173
1168