About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004975.1_1183_1260_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1183 - 1260
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCAGG
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAC
U12 Branch Point Sequence:
CCGGCCCCAACC
Flanking Amino Acid:
NLPQANVVFRGLLDSNWSVG
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.7
46.7
Major BPS
44.9
-0.3
1.2
48
33
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
31.9
-2.1
3.1
39.2
46.3
Minor BPS
44.7
-0.4
2
50.74
46

Associated Gene:

Gene:
TOMM40L
Ensembl Gene ID:
ENSAPLG00000019381
Chromosome:
PEDO01004975.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041122
104 - 1400
1297