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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004975.1_656_747_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
656 - 747
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGAG
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TACTCTTTGAGG
Flanking Amino Acid:
LGNPDLLGESVILVAHFLQS
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
59.7
41.3
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
30.7
-2.2
3.3
38.1
46.8
Minor BPS
55.2
0.02
1.7
58.75
43.6

Associated Gene:

Gene:
TOMM40L
Ensembl Gene ID:
ENSAPLG00000019381
Chromosome:
PEDO01004975.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041122
104 - 1400
1297