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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004981.1_791_3753_R

Intron Information:

Intron Rank:
133430
Intron Class:
major
Intron Phase:
Intron Coordinates:
791 - 3753
Intron Length:
2963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGCCT
5'SS Class:
major
3'SS Sequence:
TCTCTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.2
42.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.3
0.75
0.8
77.4
30.1
Minor 5ss
29.8
-2.3
3.1
40.6
45.2
Minor BPS
61.7
0.23
1.7
65.89
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019044
Chromosome:
PEDO01004981.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028747
21 - 3990
3970