Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005005.1_2241_2458_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2241 - 2458

Intron Length:

218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGGGGTGG

5'SS Class:

weak_major

3'SS Sequence:

CCGGCTGCTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAGCAC

U12 Branch Point Sequence:

CCCCCGCTAAGC

Flanking Amino Acid:

SGGTDSCQVGQDHLGAV

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.1

0.1

1.1

42.4

41.4

Major BPS

48.2

-0.1

1.4

57.7

Major PPT

60.6

0.24

0.9

36.8

Minor 5ss

31.5

-2.1

3.5

41.9

46.1

Minor BPS

-0.9

2.4

43.84

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030849

Chromosome:

PEDO01005005.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042005

339 - 2477

2139