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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005006.1_1346_1417_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1346 - 1417
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CAAACCCAAATT
Flanking Amino Acid:
KGPSGEGLQPSSPTKEVAAP
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
56.8
0.15
1
55.5
27.7
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
45.2
-0.2
2
59.53
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016464
Chromosome:
PEDO01005006.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022902
514 - 5716
5203