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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005006.1_2682_2764_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2682 - 2764
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCATC
5'SS Class:
major
3'SS Sequence:
CCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAC
U12 Branch Point Sequence:
CCCCCCAAAAAA
Flanking Amino Acid:
RERREQEEQERRLQEERAQR
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.2
39.5
Major BPS
47.7
-0.1
1
51.4
28.5
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
37.1
-1.5
3.3
50.7
46.2
Minor BPS
41.8
-0.6
1.9
46.53
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016464
Chromosome:
PEDO01005006.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022902
514 - 5716
5203