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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005006.1_3503_3627_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3503 - 3627
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
CTGGCCGGAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCAAA
U12 Branch Point Sequence:
CATGCCAAACTC
Flanking Amino Acid:
TPRRRTESSPKKKEKKEKER
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
67
39
Major BPS
49
-0
1.3
56.7
38.7
Major PPT
52.7
0.06
1.1
47
40.3
Minor 5ss
33.7
-1.9
3.3
48.1
41.4
Minor BPS
39.8
-0.7
2.1
47.57
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016464
Chromosome:
PEDO01005006.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022902
514 - 5716
5203