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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005006.1_3771_3936_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3771 - 3936
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
ACCCCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTGCTCTGACCC
Flanking Amino Acid:
VTLAGNGKEQVPVCPRSASA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
35.2
Major BPS
79
0.72
1
69
38.9
Major PPT
64.6
0.33
0.8
54.2
30.2
Minor 5ss
24.8
-2.9
3
22.4
37
Minor BPS
47.2
-0.2
1.7
55.88
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016464
Chromosome:
PEDO01005006.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022902
514 - 5716
5203