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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005027.1_869_1283_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
869 - 1283
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCCAT
5'SS Class:
major
3'SS Sequence:
CATTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTGTCCCCATTG
Flanking Amino Acid:
LQAQRTPFSKAWSVRSAPWG
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
59.9
46.4
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
76.7
0.6
1
72.9
41.9
Minor 5ss
44
-0.7
3.2
65
46.3
Minor BPS
42.5
-0.7
2.1
47.95
45.7

Associated Gene:

Gene:
SLC25A39
Ensembl Gene ID:
ENSAPLG00000017445
Chromosome:
PEDO01005027.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034462
21 - 3521
3501