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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005068.1_16460_17825_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16460 - 17825
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTCACAG
5'SS Class:
weak_major
3'SS Sequence:
ATCTGCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCATAA
U12 Branch Point Sequence:
CCCCCCCCATCT
Flanking Amino Acid:
WRPPCWLFGESAQSRQVRSW
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.3
47.3
42.8
Major BPS
52.4
0.06
1.1
49.2
36.2
Major PPT
72.3
0.5
0.9
65.8
35.3
Minor 5ss
39.3
-1.2
2.8
48.2
47.4
Minor BPS
41.2
-0.5
2
54.09
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028082
Chromosome:
PEDO01005068.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021965
16397 - 18113
1717