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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005116.1_550_650_R

Intron Information:

Intron Rank:
145500
Intron Class:
major
Intron Phase:
Intron Coordinates:
550 - 650
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.82
0.7
85.8
28.4
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025676
Chromosome:
PEDO01005116.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017608
21 - 1466
1446