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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005139.1_1589_1705_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1589 - 1705
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGT
5'SS Class:
strong_major
3'SS Sequence:
CCCACTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GTCTCACCACCA
Flanking Amino Acid:
LPCRGRVCISDLRIPLMWKD
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
41.1
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
66.8
0.38
0.8
57.2
33.3
Minor 5ss
37
-1.5
3.6
55.4
48.8
Minor BPS
40.7
-0.7
2.2
54.53
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024241
Chromosome:
PEDO01005139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023011
743 - 3809
3067