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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005139.1_1760_1826_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1760 - 1826
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCGGCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CTGGCCTGACCC
Flanking Amino Acid:
KDTEYFRNKGELHRCAVFCL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
55.7
0.13
1
48.7
34
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.3
-0.1
1.9
58.56
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024241
Chromosome:
PEDO01005139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023011
743 - 3809
3067