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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005139.1_2942_3211_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2942 - 3211
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCACGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GTGCACTCATCA
Flanking Amino Acid:
QMMCGFLKVQQAPGEPQGWA
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
64.4
0.32
1
59.3
36.8
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
44.8
-0.4
1.9
55.38
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024241
Chromosome:
PEDO01005139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023011
743 - 3809
3067