Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005141.1_2142_2239_R

Intron Information:

Intron Rank:

138909

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2142 - 2239

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-GT

5'SS Sequence:

CGT|GCAAGCTCA

5'SS Class:

weak_major

3'SS Sequence:

TTGCACACCCTGT|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAATCAA

U12 Branch Point Sequence:

TGCACCCCAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.9

0.24

1.5

55.8

42.8

Major BPS

58.9

0.22

1.1

61.7

34.2

Major PPT

19.2

-1.7

36.9

35.3

Minor 5ss

35.8

-1.6

48.7

Minor BPS

46.8

-0.2

1.9

57.17

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022245

Chromosome:

PEDO01005141.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017307

1141 - 2285

1145