Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005157.1_10421_24321_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10421 - 24321

Intron Length:

13901

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTACATGGATT

Flanking Amino Acid:

GAARCGFCGQKSAIFLTMER

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

78.6

29.6

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

75.7

0.58

0.7

73.1

25.1

Minor 5ss

43.2

-0.7

2.7

54.4

36.6

Minor BPS

53.6

0.19

1.8

78.15

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015422

Chromosome:

PEDO01005157.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039865

10368 - 36317

25950