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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005157.1_25717_35269_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25717 - 35269
Intron Length:
9553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTACTGTACTT
Flanking Amino Acid:
NSSSDDILVYRMIPAASKSF
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
57.2
47.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
43.7
-0.7
2.9
57.5
46.7
Minor BPS
48.9
-0
2.2
75.87
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015422
Chromosome:
PEDO01005157.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022396
23140 - 35780
12641
ENSAPLT00000016065
8364 - 35780
27417
ENSAPLT00000039865
10368 - 36317
25950