Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005182.1_2784_3711_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2784 - 3711

Intron Length:

928

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGAGCCCC

5'SS Class:

major

3'SS Sequence:

GCCGCTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAG

U12 Branch Point Sequence:

CCGCGCTGAGCG

Flanking Amino Acid:

HVLLSTPALDAVFTDLEILA

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.38

1.3

56.7

42.7

Major BPS

-0.2

1.6

40.4

42.3

Major PPT

60.6

0.24

36.7

Minor 5ss

35.1

-1.7

42.6

37.5

Minor BPS

39.2

-0.9

37.2

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017836

Chromosome:

PEDO01005182.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035947

833 - 5064

4232