Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005199.1_1508_2308_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1508 - 2308

Intron Length:

801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGGCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TTTTTTTTGGCT

Flanking Amino Acid:

MVAAKKTKKSLESINSR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

Major BPS

75.8

0.64

65.8

Major PPT

83.8

0.76

0.9

81.3

36.4

Minor 5ss

28.1

-2.5

3.1

35.3

41.4

Minor BPS

48.7

-0

3.5

85.97

34.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021773

Chromosome:

PEDO01005199.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034896

21 - 2337

2317