Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005250.1_1495_1633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1495 - 1633

Intron Length:

139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGGTCC

5'SS Class:

major

3'SS Sequence:

CCCATCCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GCTCCCTCCACC

Flanking Amino Acid:

DGTTRRTETTVKKVVKTVTT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

58.7

41.4

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

71.7

0.49

0.8

61.5

34.9

Minor 5ss

37.1

-1.5

3.5

51.1

45.7

Minor BPS

-0.1

61.01

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021447

Chromosome:

PEDO01005250.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037066

21 - 2488

2468