Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005272.1_2884_2925_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2884 - 2925

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAATCTTT

5'SS Class:

weak_major

3'SS Sequence:

ATTTTTTCCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TCTCTTTTGACC

Flanking Amino Acid:

MTFLPCTNEASSESIA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.5

0.25

1.2

64.6

42.1

Major BPS

83.9

0.84

73.9

41.3

Major PPT

80.5

0.69

0.7

74.3

35.9

Minor 5ss

56.5

0.22

2.7

74.4

41.7

Minor BPS

0.46

1.2

70.2

35.5

Associated Gene:

Gene:

STRADA

Ensembl Gene ID:

ENSAPLG00000012010

Chromosome:

PEDO01005272.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012537

2866 - 4919

2054