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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005272.1_3917_4042_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3917 - 4042
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACCA
Flanking Amino Acid:
LWVVTSFMAYGSAKDLICTH
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.7
41.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
33.8
-1.8
3
39
41.4
Minor BPS
65
0.47
1.7
79.77
36.3

Associated Gene:

Gene:
STRADA
Ensembl Gene ID:
ENSAPLG00000012010
Chromosome:
PEDO01005272.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048357
863 - 4919
4057
ENSAPLT00000012537
2866 - 4919
2054