Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005272.1_4167_4861_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4167 - 4861

Intron Length:

695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAATAA

5'SS Class:

strong_major

3'SS Sequence:

AGGAGTGTGAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TGTTGTTCAAGG

Flanking Amino Acid:

DYIHHMGYVHSQPYPDFRRW

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.3

28.1

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

45.4

-0.2

1.2

36.7

43.8

Minor 5ss

36.6

-1.5

3.1

46.9

48.4

Minor BPS

45.6

-0.4

2.2

55.88

45.6

Associated Gene:

Gene:

STRADA

Ensembl Gene ID:

ENSAPLG00000012010

Chromosome:

PEDO01005272.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048357

863 - 4919

4057

ENSAPLT00000012537

2866 - 4919

2054