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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005315.1_846_923_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
846 - 923
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GGGTGTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAC
U12 Branch Point Sequence:
GGTGTCCTACAG
Flanking Amino Acid:
AVREWAHVSSAVLGRPVPEV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
47.8
-0.1
1
53.1
30.9
Major PPT
66.8
0.38
1
57.9
43.3
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
39.7
-0.9
2
42.38
42.2

Associated Gene:

Gene:
BTBD19
Ensembl Gene ID:
ENSAPLG00000019290
Chromosome:
PEDO01005315.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025097
375 - 1261
887