Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005357.1_2335_2543_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2335 - 2543

Intron Length:

209

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCGG

5'SS Class:

major

3'SS Sequence:

CTGCTGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTCAC

U12 Branch Point Sequence:

GGTGGGGTCACG

Flanking Amino Acid:

GNACTRQPGYRELVVGALPH

Intron Amino Acid Position:

411

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

59.7

46.7

Major BPS

46.8

-0.2

1.4

48.8

46.3

Major PPT

75.7

0.58

0.9

68.9

37.1

Minor 5ss

26.8

-2.7

2.9

31.8

42.6

Minor BPS

29.2

-1.7

2.8

35.81

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026278

Chromosome:

PEDO01005357.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019258

661 - 4552

3892