About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005357.1_475_665_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
475 - 665
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACG
5'SS Class:
major
3'SS Sequence:
CCTCCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCGCAG
U12 Branch Point Sequence:
CTGGCCGCAGCA
Flanking Amino Acid:
AGKELLRQHAGHITAETFMA
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
36.5
-0.8
1.6
39
42.9
Major PPT
68.7
0.42
0.9
61.2
35
Minor 5ss
32.9
-2
3.1
39.9
45.9
Minor BPS
40
-0.7
2.3
50.89
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014736
Chromosome:
PEDO01005357.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015352
52 - 1342
1291