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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005387.1_6405_6530_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6405 - 6530
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGACGCCT
5'SS Class:
weak_major
3'SS Sequence:
CAGCCCAGCTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACAACA
Flanking Amino Acid:
FSSSFYLILEQVVGPDHPVT
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.2
48.1
42.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
55.1
0.11
1
50.8
37.6
Minor 5ss
35.7
-1.6
3.4
54
43.9
Minor BPS
55.8
0.18
1.8
74.2
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024913
Chromosome:
PEDO01005387.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014167
2764 - 6622
3859