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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005388.1_14634_16492_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14634 - 16492
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCCTCTGACC
Flanking Amino Acid:
FISWSPDNSPVRLKMLYAAT
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75.2
0.57
0.9
70.8
33.5
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
49.2
-0
1.7
59.64
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027677
Chromosome:
PEDO01005388.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040193
9830 - 19549
9720