About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005388.1_9933_14454_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9933 - 14454
Intron Length:
4522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTTGCATAACG
Flanking Amino Acid:
VRLIKVVIEDEQLVLGAHKE
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61
44
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
39.6
-1.2
3
53.3
43.4
Minor BPS
55.5
0.04
2.2
68.11
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027677
Chromosome:
PEDO01005388.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040193
9830 - 19549
9720