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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005400.1_2239_2362_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2239 - 2362
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAACT
Flanking Amino Acid:
KILIATDLAARGLDIPTVQV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.4
0.53
0.9
63.9
41.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
74.9
0.86
1.5
88.97
35.3

Associated Gene:

Gene:
DDX49
Ensembl Gene ID:
ENSAPLG00000008420
Chromosome:
PEDO01005400.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008783
274 - 2909
2636