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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005400.1_516_720_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
516 - 720
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
GCTCGGTTAATG
Flanking Amino Acid:
LKDCVVVGGLDMVAQALELS
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.2
33
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
81.9
0.72
0.8
76.6
32
Minor 5ss
28
-2.5
3.1
35.2
41.4
Minor BPS
43.5
-0.6
2.4
48.98
45.1

Associated Gene:

Gene:
DDX49
Ensembl Gene ID:
ENSAPLG00000008420
Chromosome:
PEDO01005400.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008783
274 - 2909
2636