Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005406.1_21878_25575_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21878 - 25575

Intron Length:

3698

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGATCAGA

5'SS Class:

weak_major

3'SS Sequence:

TTTAAGTGGCGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATTAATTATCT

Flanking Amino Acid:

GAEECWGQFWQALLVKHCFP

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.5

0.13

1.1

51.9

40.8

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

45.7

-0.2

1.8

46.5

49.5

Minor 5ss

35.6

-1.6

2.9

45.3

43.7

Minor BPS

55.4

0.25

79.94

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009757

Chromosome:

PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010243

15711 - 38392

22682