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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005406.1_29103_34636_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29103 - 34636
Intron Length:
5534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTTTTCCATC
Flanking Amino Acid:
EVVAMARKLQDVFEMRFAKM
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
50.2
-0
1.9
69.41
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009757
Chromosome:
PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010243
15711 - 38392
22682
Gene:
Ensembl Gene ID:
ENSAPLG00000027896
Chromosome:
PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024813
25659 - 52207
26549