About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005406.1_37065_38276_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37065 - 38276
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGTC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCCTTCTGACGC
Flanking Amino Acid:
SCLRKKRKPQAEKVDVIAGS
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.7
40.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
41.7
-0.9
3.4
61.2
43.7
Minor BPS
45
-0.3
2
53.77
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009757
Chromosome:
PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010243
15711 - 38392
22682
Gene:
Ensembl Gene ID:
ENSAPLG00000027896
Chromosome:
PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024813
25659 - 52207
26549