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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005406.1_38388_45364_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

38388 - 45364

Intron Length:

6977

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGATGC

5'SS Class:

major

3'SS Sequence:

CTTCTCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

GGGTACTAACAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.65

1.1

38.2

Major BPS

76.8

0.67

0.9

75.9

Major PPT

0.88

0.6

84.1

23.9

Minor 5ss

34.6

-1.7

2.9

Minor BPS

41.8

-0.5

2.1

55.75

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027896

Chromosome:

PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024813

25659 - 52207

26549