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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005406.1_50112_50297_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

50112 - 50297

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGGGA

5'SS Class:

major

3'SS Sequence:

GCTAACGTGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

GGTGCCTGACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

66.4

39.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

56.7

0.15

1.1

43.5

Minor 5ss

27.9

-2.5

3.5

46.8

Minor BPS

49.1

-0

1.9

60.92

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027896

Chromosome:

PEDO01005406.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024813

25659 - 52207

26549