Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005449.1_2546_2886_R

Intron Information:

Intron Rank:

151224

Intron Class:

major

Intron Phase:

Intron Coordinates:

2546 - 2886

Intron Length:

341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTGTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GAATGTTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

81.3

32.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

88.3

0.86

0.8

88.2

29.1

Minor 5ss

-2.4

3.2

40.6

45.6

Minor BPS

0.01

66.67

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028888

Chromosome:

PEDO01005449.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031313

462 - 3368

2907