About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005506.1_2495_2637_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2495 - 2637
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
ACTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
EAVSALSGRKRQKLAERSEA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
57.1
42.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.2
0.81
0.7
81.2
30.1
Minor 5ss
34.2
-1.8
3
44.2
43.2
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029175
Chromosome:
PEDO01005506.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022284
2002 - 3187
1186