Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005508.1_5101_5341_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5101 - 5341

Intron Length:

241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCCTT

5'SS Class:

major

3'SS Sequence:

TTCCCACCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

CATTTCCCACCC

Flanking Amino Acid:

GLETGNPTLKTEELGCRAPQ

Intron Amino Acid Position:

410

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.2

72.7

44.5

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

73.4

0.53

0.8

70.2

29.5

Minor 5ss

49.3

-0

2.9

42.4

Minor BPS

43.9

-0.4

55.98

42.3

Associated Gene:

Gene:

FGD2

Ensembl Gene ID:

ENSAPLG00000030406

Chromosome:

PEDO01005508.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028227

2911 - 14091

11181