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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005508.1_8626_13058_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8626 - 13058
Intron Length:
4433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ATGATCTCAAAT
Flanking Amino Acid:
YVNRLHLLDQVFYTELMKEA
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
83.4
0.75
0.8
80.7
30.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
51.4
0.12
1.7
68.65
41.8

Associated Gene:

Gene:
FGD2
Ensembl Gene ID:
ENSAPLG00000030406
Chromosome:
PEDO01005508.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028227
2911 - 14091
11181